IRootLab
An Open-Source MATLAB toolbox for vibrational biospectroscopy
All GUIs

Detailed Description

Files

file  about.m
 About Dialog.
 
file  ask_dataset.m
 Browses datasets present in workspace for GUI user to choose one.
 
file  ask_hierarchy.m
 Asks uses to type in dataset class levels (for varying purposes).
 
file  ask_peakdetector.m
 Asks for a peak detector object. Specifying one or not will be optional to the user.
 
file  buggui.m
 buggui Dialog
 
file  irerrordlg.m
 Error dialog.
 
file  orhistgui.m
 GUI to preview the action outlier removal.
 
file  orhistgui_find_handles.m
 Finds handles for orhistgui.
 
file  orhistgui_refresh.m
 Refreshes controls in orhistgui.
 
file  orhistgui_set_remover.m
 Sets block of orhistgui.
 
file  orhistgui_show.m
 Calls GUI to preview the action outlier removal.
 
file  orhistgui_view1.m
 Draws histogram in orhistgui.
 
file  orhistgui_view2.m
 Draws datasets in orhistgui.
 
file  send_error_gui.m
 send_error_gui Dialog
 
file  blockmenu.m
 Class Selection Dialog.
 
file  datatool.m
 datatool, see also objtool.m
 
file  gendata.m
 Lets the user create a dataset by clicking the mouse and pressing the number keys.
 
file  irootgui.m
 Calls the main GUI.
 
file  irootlabgui.m
 OpenSpec main GUI.
 
file  mergetool.m
 Tool to merge several single-spectrum files into a dataset.
 
file  objtool.m
 Object browser.
 
file  sheload.m
 GUI for loading datasets from the SHEware database.
 
file  uip_as_crossc.m
 Properties Window for Cross-calculation Analysis Session.
 
file  uip_as_fsel_forward.m
 Properties Window for as_fsel_forward (Forward Feature Selection) Number of features - see as_fsel_forward::nf_select.
 
file  uip_as_fsel_grades.m
 Properties Window for as_fsel_grades.
 
file  uip_as_grades_fsg.m
 Properties Window for as_grades_fsg.
 
file  uip_factorscurve.m
 Rater (rater) Properties Window.
 
file  uip_fselrepeater.m
 Properties Window for fselrepeater.
 
file  uip_gridsearch.m
 Grid Search Properties Window.
 
file  uip_ovrcurves.m
 Properties Window for blmisc_split_ovr.
 
file  uip_rater.m
 Rater (rater) Properties Window.
 
file  uip_reptt.m
 Repeated Train-Test (reptt) Properties Window.
 
file  uip_reptt_bag.m
 Properties Window to create a Cascade Block.
 
file  uip_reptt_blockcube.m
 Properties Window for a reptt_blockcube.
 
file  uip_reptt_hiesplit.m
 Properties Window for a reptt_hiesplit.
 
file  uip_subsetsprocessor.m
 Properties Window for subsetsprocessor.
 
file  uip_blbl_extract_cv.m
 Properties Windows for blbl_extract_cv.
 
file  uip_blbl_extract_ds_from_sovalues.m
 Properties Window for blbl_extract_ds_from_sovalues.
 
file  uip_blmisc_classes_from_clus.m
 Properties Window for the "Classes from cluster" block.
 
file  uip_blmisc_classlabels_hierarchy.m
 Properties Window for blmisc_classlabels_hierarchy.
 
file  uip_blmisc_classlabels_rename.m
 Properties Windows for blmisc_classlabels_rename.
 
file  uip_blmisc_fearange.m
 Properties Window for blmisc_fearange.
 
file  uip_blmisc_rowsout_distr.m
 Dialogbox for Distribution-based Outlier Removal.
 
file  uip_blmisc_rowsout_hist.m
 Properties Windows for blmisc_rowsout_hist.
 
file  uip_blmisc_rowsout_kernel.m
 Properties Window for Kernel-based Outlier Removal.
 
file  uip_blmisc_rowsout_multistage.m
 Properties Window for a Multi-stage Outlier Removal block.
 
file  uip_blmisc_rowsout_ranges.m
 Properties Window for Range-based Outlier Removal.
 
file  uip_blmisc_split_classes.m
 Properties Window for blmisc_split_classes.
 
file  uip_blmisc_split_ovo.m
 Properties Window for blmisc_split_ovo.
 
file  uip_blmisc_split_ovr.m
 Properties Window for blmisc_split_ovr.
 
file  uip_blmisc_split_proportion.m
 Properties Windows for blmisc_split_proportion.
 
file  uip_rowaggr_nmean.m
 Properties Windows for rowaggr_nmean.
 
file  uip_aggr.m
 Properties Window for aggr.
 
file  uip_aggr_adaboost.m
 Properties Window for aggr_adaboost.
 
file  uip_aggr_bag.m
 Properties Window for aggr_bag.
 
file  uip_aggr_hiesplit.m
 Properties Window to create a Hie-Split Aggregation.
 
file  uip_aggr_mold.m
 Properties Window for aggr_mold.
 
file  uip_aggr_pairs.m
 Properties Window for aggr_bag.
 
file  uip_clssr_ann.m
 Properties Window for clssr_ann.
 
file  uip_clssr_d.m
 Properties Window for clssr_d.
 
file  uip_clssr_dist.m
 Properties Window for clssr_dist.
 
file  uip_clssr_knn.m
 Properties Window for clssr_knn.
 
file  uip_clssr_mnr.m
 Logistig Regression Properties Window As the logistic regression model does not have any setup parameter at the moment, this script file when is called just creates a new block.
 
file  uip_clssr_svm.m
 Properties Window for clssr_svm.
 
file  uip_clssr_tree.m
 Properties Window for clssr_tree.
 
file  uip_frbm.m
 Properties Window for Fuzzy Rule-Based Model (frbm)
 
file  uip_clus_hca.m
 Properties Window for clus_hca.
 
file  uip_decider.m
 Parameters Window for decider.
 
file  uip_fcon_feaavg.m
 Properties Window for fcon_feaavg.
 
file  uip_fcon_lda.m
 Properties Window for fcon_lda.
 
file  uip_fcon_maxminpos.m
 Properties Window for fcon_maxminpos.
 
file  uip_fcon_mcr.m
 Properties Window for fcon_mcr.
 
file  uip_fcon_mea_norm.m
 Properties Window for fcon_mea_norm.
 
file  uip_fcon_mea_pick.m
 Properties window for fcon_mea_pick.
 
file  uip_fcon_pca.m
 Properties Window for fcon_pca.
 
file  uip_fcon_pls.m
 Properties Window for fcon_pls.
 
file  uip_fcon_resample.m
 Properties Window for fcon_resample.
 
file  uip_fcon_spline.m
 Properties Window for fcon_spline.
 
file  uip_fsel.m
 Properties Window for fsel.
 
file  uip_pre_bc_asls.m
 Properties Window for pre_bc_asls.
 
file  uip_pre_bc_poly.m
 Properties Window for pre_bc_poly.
 
file  uip_pre_bc_rmiesc.m
 Properties Window for pre_bc_rmiesc.
 
file  uip_pre_bc_rubber.m
 Properties Window for Rubberband-like baseline correction.
 
file  uip_pre_diff.m
 Properties Window for pre_diff.
 
file  uip_pre_diff_sg.m
 Properties Window for pre_diff_sg.
 
file  uip_pre_flip_refmean.m
 Properties Window for pre_flip_refmean.
 
file  uip_pre_norm.m
 Properties Window for pre_norm.
 
file  uip_pre_sub_refmean.m
 Properties Window for pre_sub_refmean.
 
file  uip_pre_wden.m
 Properties Window for pre_wden.
 
file  uip_report_estlog.m
 Properties Window for report_estlog.
 
file  uip_report_log_fselrepeater_hist.m
 Properties Window for report_log_fselrepeater_hist.
 
file  uip_report_soitem_fhg_hist.m
 Properties Windows for report_soitem_fhg_hist.
 
file  uip_report_soitem_merger_fhg.m
 Properties Window for report_soitem_merger_fhg.
 
file  uip_report_soitem_merger_merger_fhg.m
 Properties Window for report_soitem_merger_merger_fhg.
 
file  uip_report_soitem_merger_merger_fitest.m
 Properties Window for report_soitem_merger_merger_fitest.
 
file  uip_report_sovalues_comparison.m
 Properties Window for report_sovalues_comparison.
 
file  uip_report_testtable.m
 Properties Window for report_testtable.
 
file  uip_report_ttlog.m
 Properties Window for report_ttlog Generate time snapshot confusion matrices - see report_ttlog::flag_individual.
 
file  uip_vis_stackedhists.m
 Properties Window for vis_stackedhists.
 
file  uip_block_cascade.m
 Properties Window to create a Cascade Block.
 
file  uip_block_cascade_base.m
 Calls Properties GUIs for all component blocks.
 
file  uip_pre_sigwindow.m
 Properties Window for pre_sigwindow.
 
file  uip_vis_as_fsel.m
 Properties Window for vis_as_fsel.
 
file  uip_vis_as_grades.m
 Properties Window for vis_as_grades.
 
file  uip_vis_cov.m
 Properties Window for vis_cov.
 
file  uip_vis_curvefit.m
 Properties Window for vis_curvefit.
 
file  uip_vis_cv.m
 Properties Window for vis_cv.
 
file  uip_vis_featuregrades.m
 Properties Dialog for vis_featuregrades.
 
file  uip_vis_grades.m
 Properties Window used by uip_vis_loadings.m and uip_vis_cv.m.
 
file  uip_vis_hists.m
 Properties Window for vis_hists.
 
file  uip_vis_image.m
 Properties Window for vis_image.
 
file  uip_vis_image_cat.m
 Properties Window for vis_image_cat.
 
file  uip_vis_loadings.m
 Properties Window for vis_loadings.
 
file  uip_vis_log_as_fsel.m
 Properties Window for vis_log_as_fsel.
 
file  uip_vis_log_grades.m
 Properties Windows for vis_log_grades.
 
file  uip_vis_log_ovrcurves.m
 Properties Windows for vis_log_ovrcurves.
 
file  uip_vis_means.m
 Properties Windows for vis_means.
 
file  uip_vis_scatter1d.m
 Properties Window for vis_scatter1d.
 
file  uip_vis_scatter2d.m
 Properties Window for vis_scatter2d.
 
file  uip_vis_scatter3d.m
 Properties Window for vis_scatter3d (3D Scatter Plot)
 
file  uip_vis_scatter3d2.m
 Properties Window for vis_scatter3d2.
 
file  uip_vis_scatter3dgif.m
 Properties Window for vis_scatter3dgif (3D GIF animation)
 
file  uip_vis_sovalues_drawimage.m
 Properties Window for vis_sovalues_drawimage.
 
file  uip_vis_sovalues_drawplot.m
 Properties Window for vis_sovalues_drawplot.
 
file  uip_vis_sovalues_drawsubplot.m
 Properties Window for vis_sovalues_drawsubplot.
 
file  uip_dataio_txt_basic.m
 Asks user whether to use x-axis range from file or a custom one.
 
file  uip_dataio_txt_basic_image.m
 Properties Windows for dataio_txt_basic_image.
 
file  uip_dataio_txt_dpt.m
 Properties Window for vis_image.
 
file  uip_dataio_txt_pir_image.m
 
file  uip_fsg_clssr.m
 Properties Window for fsg_clssr.
 
file  uip_fsg_test_anova.m
 Properties Window for fsg_test_anova.
 
file  uip_fsg_test_manova.m
 Properties Window for fsg_test_manova.
 
file  uip_fsg_test_t.m
 Properties Window for fsg_test_t.
 
file  uip_fsg_test_u.m
 Properties Window for fsg_test_u.
 
file  uip_estlog_classxclass.m
 Properties Window for estlog_classxclass.
 
file  uip_estlog_groupxclass.m
 Properties Window for estlog_groupxclass.
 
file  uip_estlog_rightwrong.m
 Properties Window for estlog_rightwrong.
 
file  uip_vis_crossloadings.m
 Properties Window for vis_crossloadings - fold-wise loadings vectors resulting from cross-calculation.
 
file  uip_peakdetector.m
 Properties Window for peakdetector.
 
file  uip_sgs.m
 Properties Window common to all sgs classes.
 
file  uip_sgs_crossval.m
 Properties Window for K-Fold Cross-validation (sgs_crossval)
 
file  uip_sgs_randsub.m
 Properties Window for Random subsampling (sgs_randsub)
 
file  uip_sgs_randsub_base.m
 Properties Window for Random sub-sampling (sgs_randsub_base)
 
file  uip_logrecorder.m
 Log recorder Properties Window.
 
file  uip_vectorcomp_ttest.m
 Properties Window for vectorcomp_ttest.
 
file  uip_vectorcomp_utest.m
 Properties Window for vectorcomp_utest.
 
file  welcome.m
 welcome Dialog
 
file  create_default_objects.m
 Creates a few objects in the base workspace.
 
file  rename_object.m
 Renames object.
 
file  iroot.m
 Calls the IRootLab main GUI.
 
file  irootlab.m
 Calls the IRootLab main GUI.