IRootLab
An Open-Source MATLAB toolbox for vibrational biospectroscopy
sgs Class Reference

Detailed Description

Base Sub-dataset Generation Specification (SGS) class.

This class generates index maps to sub-datasets, formulating these maps according to various criteria, including cross-validation, random sub-sampling, and weighted sub-sampling.

Definition at line 6 of file sgs.m.

+ Inheritance diagram for sgs:
+ Collaboration diagram for sgs:

Public Member Functions

function sgs (in o)
 
function get no_pieces (in o)
 If hasn't been setup yet, will return a NaN. More...
 
function setup (in o, in data)
 
function get_obsidxs (in o, in data)
 Solves o.no_unitss. More...
 
function assert (in o)
 Data-independent validation. Can be used at the GUI to check for parameter inconsistencies. More...
 
function get_description (in o, in flag_short)
 
function setbatch (in o, in params)
 Sets several properties of an object at once. More...
 
function get_methodname (in o, in flag_short)
 
function get_report (in o)
 Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication. More...
 
function get_html (in o, in flag_stylesheet)
 
function get_params (in o, in data)
 Calls Parameters GUI. More...
 
function extract_log (in o)
 
function get_ancestry (in o, in flag_title)
 

Public Attributes

Property flag_group
 =0. Whether items from the same group (group) are to always remain together. More...
 
Property flag_perclass
 =0. Whether to perform on each class separately. More...
 
Property randomseed
 
Property no_pieces
 read-only More...
 
Property title
 
Property color
 

Protected Member Functions

function get_repidxs (in o)
 keyboard; More...
 
function do_setup (in o)
 Must be implemented at the descendants. More...
 
function do_assert (in o)
 Data-independent validation. More...
 
function do_get_report (in o)
 Default report. More...
 
function do_get_html (in o)
 Abstract. HTML inner body. More...
 

Protected Attributes

Property flag_setup
 
Property data
 
Property pieces
 
Property no_unitss
 
Property maps
 
Property pr_flag_group
 Calculated upon setup, will be zero if flag_group but dataset has no groups. More...
 
Property classtitle
 Class Title. Should have a descriptive name, as short as possible. More...
 
Property short
 Short for the method name. More...
 
Property flag_params
 
Property flag_ui
 (GUI setting) Whether to "publish" in blockmenu and datatool. Note that a class can be "published" without a GUI (set flag_params=0 in this case, at the class constructor). More...
 
Property moreactions
 (GUI setting) String cell containing names of methods that may be called from the GUIs More...
 

Constructor & Destructor Documentation

function sgs::sgs ( in  o)

Member Function Documentation

function sgs::assert ( in  o)

Data-independent validation. Can be used at the GUI to check for parameter inconsistencies.

function sgs::do_assert ( in  o)
protected

Data-independent validation.

function irobj::do_get_html ( in  o)
protectedinherited

Abstract. HTML inner body.

function irobj::do_get_report ( in  o)
protectedinherited

Default report.

function sgs::do_setup ( in  o)
protected

Must be implemented at the descendants.

function irobj::extract_log ( in  o)
inherited
Parameters
o
Returns
[o, log]
function irobj::get_ancestry ( in  o,
in  flag_title 
)
inherited
Parameters
o
flag_title=1
function irobj::get_description ( in  o,
in  flag_short 
)
inherited

Returns description string

Precedence according with flag_short:

  • 0: title > short > classtitle
  • 1: short > title > classtitle
Parameters
flag_short=0I am sealing this to make sure that no class will try to improvise on this function.
function irobj::get_html ( in  o,
in  flag_stylesheet 
)
inherited
Parameters
flag_stylesheet=1Whether to include the stylesheet in the HTML
function irobj::get_methodname ( in  o,
in  flag_short 
)
inherited

This is used only to compose sequence string e.g. xxx->yyy->zzz

Parameters
flag_short=0
function sgs::get_obsidxs ( in  o,
in  data 
)

Solves o.no_unitss.

function irobj::get_params ( in  o,
in  data 
)
inherited

Calls Parameters GUI.

If flag_params, tries uip_<class>.m. If fails, tries uip_<ancestor>.m and so on

function sgs::get_repidxs ( in  o)
protected

keyboard;

In the grouped, per-class case, converts to per-piece observation to later use the common fragment belowMust be implemented at the descendants, this is essentially what is different for every different sgs method This function is group-or-observation-unaware Returns a 1D cell array or 2D cell arrays. Each element/2D cell array contains one row per piece and one column per bite. This function does not know if it is working with groups or observations

function irobj::get_report ( in  o)
inherited

Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication.

function get sgs::no_pieces ( in  o)

If hasn't been setup yet, will return a NaN.

function irobj::setbatch ( in  o,
in  params 
)
inherited

Sets several properties of an object at once.

Parameters
o
paramsCell followint the pattern
{'property1', value1, 'property2', value2, ...} 
function sgs::setup ( in  o,
in  data 
)

Member Data Documentation

Property irobj::classtitle
protectedinherited

Class Title. Should have a descriptive name, as short as possible.

Definition at line 50 of file irobj.m.

Property irobj::color
inherited

=[0, .8, 0]. multipurpose feature, routines may use it for different things. Major use is to change the background of objtool and blockmenu. See also classes_html.m

Definition at line 42 of file irobj.m.

Property sgs::data
protected

Definition at line 32 of file sgs.m.

Property sgs::flag_group

=0. Whether items from the same group (group) are to always remain together.

Definition at line 12 of file sgs.m.

Property irobj::flag_params
protectedinherited

=1. (GUI setting) Whether to call a GUI when the block is selected in blockmenu.m . If true, a routine called "uip_"<class name> will be called.

Definition at line 57 of file irobj.m.

Property sgs::flag_perclass

=0. Whether to perform on each class separately.

Definition at line 15 of file sgs.m.

Property sgs::flag_setup
protected

Definition at line 30 of file sgs.m.

Property irobj::flag_ui
protectedinherited

(GUI setting) Whether to "publish" in blockmenu and datatool. Note that a class can be "published" without a GUI (set flag_params=0 in this case, at the class constructor).

Definition at line 60 of file irobj.m.

Property sgs::maps
protected

Definition at line 42 of file sgs.m.

Property irobj::moreactions
protectedinherited

(GUI setting) String cell containing names of methods that may be called from the GUIs

Definition at line 63 of file irobj.m.

Property sgs::no_pieces

read-only

Definition at line 23 of file sgs.m.

Property sgs::no_unitss
protected

Number of "units" in dataset. This may be a single value containing the number of observations or groups, depending on .flag_group, or a vector containing that information for each class, if .flag_perclass is True.

Definition at line 40 of file sgs.m.

Property sgs::pieces
protected

Definition at line 34 of file sgs.m.

Property sgs::pr_flag_group
protected

Calculated upon setup, will be zero if flag_group but dataset has no groups.

Definition at line 46 of file sgs.m.

Property sgs::randomseed

=0. Random seed. Only used if > 0. if > 0, MATLAB's rand('twister', o.randseed) will be called before. This can be used to repeat sequences.

Definition at line 19 of file sgs.m.

Property irobj::short
protectedinherited

Short for the method name.

Definition at line 53 of file irobj.m.

Property irobj::title
inherited

Definition at line 38 of file irobj.m.


The documentation for this class was generated from the following file: