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IRootLab
An Open-Source MATLAB toolbox for vibrational biospectroscopy
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"Rater" class
This class makes simple the job evaluating a classifier performance through cross-validation. It fills in all properties with default values, except from data:
A more complex (but complete) alternative is reptt_blockcube
Public Member Functions | |
function | rater () |
function | get_grades (in o, in params) |
Abstract. Method to get the per-feature grades. BMTool stuff. More... | |
function | get_gradeslegend (in o, in params) |
Abstract. Method to get block title based on passed parameters. BMTool stuff. More... | |
function | use (in o, in data) |
Applies block to data. More... | |
function | train (in o, in data, in varargin) |
Trains block. More... | |
function | boot (in o) |
Configures the structure to deal with new type of data. More... | |
function | get_description (in o, in flag_short) |
function | setbatch (in o, in params) |
Sets several properties of an object at once. More... | |
function | get_methodname (in o, in flag_short) |
function | get_report (in o) |
Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication. More... | |
function | get_html (in o, in flag_stylesheet) |
function | get_params (in o, in data) |
Calls Parameters GUI. More... | |
function | extract_log (in o) |
function | get_ancestry (in o, in flag_title) |
Public Attributes | |
Property | clssr |
Property | sgs |
(Optional). If two datasets are passed, a SGS is not created, but the datasets are used instead for a single train-test More... | |
Property | postpr_test |
(Optional) Block to post-process the test data. More... | |
Property | postpr_est |
Block to post-process the estimation issued by the classifier. More... | |
Property | ttlog |
Property | title |
Property | color |
Protected Member Functions | |
function | do_use (in o, in data) |
Returns the object with its ttlog ready to have its get_rate() called. More... | |
function | get_rate (in o) |
function | get_rate_with_clssr (in o, in x) |
function | check (in o, in data) |
function | do_train (in o, in data) |
function | do_boot (in o) |
Boots the block. More... | |
function | do_get_report (in o) |
Default report. More... | |
function | do_get_html (in o) |
Abstract. HTML inner body. More... | |
Protected Attributes | |
Property | flag_sgs |
Property | inputclass |
Property | flag_bootable |
=0. (High-Level setting and internal function) Whether or not the block is bootable. More... | |
Property | flag_trainable |
=0. (High-Level + internal function). Whether or not the block can be trained, or completely non-data-based. More... | |
Property | flag_incrtrain |
Property | flag_fixednf |
=1. (internal function) If true, dataset number of features will be checked upon training and using. Ignored if o.flag_trainable is 0. More... | |
Property | flag_fixedno |
=0. (internal function) If true, dataset number of observations will be checked upon training and using. Ignored if o.flag_trainable is 0. More... | |
Property | flag_multiin |
=0. (High-Level setting (gencode)) Whether block allows/expects multiple objects as input. More... | |
Property | flag_out |
=1. (High-Level setting (gencode)) Whether the block generates any output at all (counterexample: vis blocks) More... | |
Property | flag_train_inliers_only |
Property | flag_train_require_inliers |
Property | nf |
=-1. Number of features. Cleared at boot(), assigned or reinforced at train(). More... | |
Property | no |
=-1. Number of observations. More... | |
Property | flag_trained |
=0. Set to 1 by train() if training is successful; set back to 0 after booting. More... | |
Property | flag_booted |
=0. Set to 1 by boot() after booting the block More... | |
Property | time_train |
Trainings time. More... | |
Property | time_use |
Use time. More... | |
Property | classtitle |
Class Title. Should have a descriptive name, as short as possible. More... | |
Property | short |
Short for the method name. More... | |
Property | flag_params |
Property | flag_ui |
(GUI setting) Whether to "publish" in blockmenu and datatool. Note that a class can be "published" without a GUI (set flag_params=0 in this case, at the class constructor). More... | |
Property | moreactions |
(GUI setting) String cell containing names of methods that may be called from the GUIs More... | |
function rater::rater | ( | ) |
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inherited |
Configures the structure to deal with new type of data.
Booting accounts for clearing any recordings; model structure; stored data etc from the object so that it can be re-used anew.
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protected |
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protectedinherited |
Boots the block.
Abstract. Booting accounts for clearing any recordings; model structure; stored data etc from the object so that it can be re-used anew.
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protectedinherited |
Abstract. HTML inner body.
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protectedinherited |
Default report.
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protectedinherited |
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protected |
Returns the object with its ttlog ready to have its get_rate() called.
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inherited |
o |
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inherited |
o | |
flag_title=1 |
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inherited |
Returns description string
Precedence according with flag_short:
flag_short=0 | I am sealing this to make sure that no class will try to improvise on this function. |
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inherited |
Abstract. Method to get the per-feature grades. BMTool stuff.
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inherited |
Abstract. Method to get block title based on passed parameters. BMTool stuff.
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inherited |
flag_stylesheet=1 | Whether to include the stylesheet in the HTML |
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inherited |
This is used only to compose sequence string e.g. xxx->yyy->zzz
flag_short=0 |
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inherited |
Calls Parameters GUI.
If flag_params
, tries uip_<class>.m. If fails, tries uip_<ancestor>.m and so on
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protected |
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protected |
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inherited |
Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication.
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inherited |
Sets several properties of an object at once.
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params | Cell followint the pattern{'property1', value1, 'property2', value2, ...} |
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inherited |
Trains block.
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inherited |
Applies block to data.
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protectedinherited |
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inherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
=0. (internal function). Whether or not the block accepts incremental training. The meaning is:
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protectedinherited |
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protectedinherited |
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protectedinherited |
=1. (GUI setting) Whether to call a GUI when the block is selected in blockmenu.m . If true, a routine called "uip_"<class name> will be called.
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protectedinherited |
If true, train() will pass on to do_train() a dataset with inliers only. If this flag is true, flag_train_require_inliers will be ignored, because flag_train_inliers_only being true is one way to solve the "inliers requirement".
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
Property rater::postpr_est |
Property rater::postpr_test |
Property rater::sgs |
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protectedinherited |
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protectedinherited |