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IRootLab
An Open-Source MATLAB toolbox for vibrational biospectroscopy
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Pre-determined dataset splits.
The number of components and how their respective training data are obtained are pre-determined by the obsidxs property.
Allows multi-training but this is pointless unless the component classifiers are non-deterministic
Not currently published in the GUI
Definition at line 8 of file aggr_obsidxs.m.
Public Member Functions | |
function | aggr_obsidxs () |
function | add_clssr (in o, in cl) |
function get | no_outputs (in o) |
function | boot (in o) |
Resets classlabels and calls clssr::boot() More... | |
function | get_classes (in o, in data) |
function | draw_domain (in o, in parameters) |
function | get_grades (in o, in params) |
Abstract. Method to get the per-feature grades. BMTool stuff. More... | |
function | get_gradeslegend (in o, in params) |
Abstract. Method to get block title based on passed parameters. BMTool stuff. More... | |
function | use (in o, in data) |
Applies block to data. More... | |
function | train (in o, in data, in varargin) |
Trains block. More... | |
function | get_description (in o, in flag_short) |
function | setbatch (in o, in params) |
Sets several properties of an object at once. More... | |
function | get_methodname (in o, in flag_short) |
function | get_report (in o) |
Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication. More... | |
function | get_html (in o, in flag_stylesheet) |
function | get_params (in o, in data) |
Calls Parameters GUI. More... | |
function | extract_log (in o) |
function | get_ancestry (in o, in flag_title) |
Public Attributes | |
Property | block_mold |
must contain a block object that will be replicated as needed More... | |
Property | obsidxs |
Property | esag |
=esag_linear1. Estimation Aggregator object More... | |
Property | flag_ests |
=0. Whether to record the estimations of the component classifiers into the object (o ) itself in the do_use() method. More... | |
Property | ests |
(Read-only) estimato objects carried out of do_use() if flag_ests is true More... | |
Property | blocks |
(Read-only) Structure array with fields block and classlabels More... | |
Property | flag_datay |
Property | title |
Property | color |
Protected Member Functions | |
function | do_boot (in o) |
function | do_train (in o, in data) |
function | do_use (in o, in data) |
function | get_no_outputs (in o) |
function | do_draw_domain (in o, in params) |
function | do_get_report (in o) |
Default report. More... | |
function | do_get_html (in o) |
Abstract. HTML inner body. More... | |
Protected Attributes | |
Property | classlabels |
Property | no_outputs |
Property | inputclass |
Property | flag_bootable |
=0. (High-Level setting and internal function) Whether or not the block is bootable. More... | |
Property | flag_trainable |
=0. (High-Level + internal function). Whether or not the block can be trained, or completely non-data-based. More... | |
Property | flag_incrtrain |
Property | flag_fixednf |
=1. (internal function) If true, dataset number of features will be checked upon training and using. Ignored if o.flag_trainable is 0. More... | |
Property | flag_fixedno |
=0. (internal function) If true, dataset number of observations will be checked upon training and using. Ignored if o.flag_trainable is 0. More... | |
Property | flag_multiin |
=0. (High-Level setting (gencode)) Whether block allows/expects multiple objects as input. More... | |
Property | flag_out |
=1. (High-Level setting (gencode)) Whether the block generates any output at all (counterexample: vis blocks) More... | |
Property | flag_train_inliers_only |
Property | flag_train_require_inliers |
Property | nf |
=-1. Number of features. Cleared at boot(), assigned or reinforced at train(). More... | |
Property | no |
=-1. Number of observations. More... | |
Property | flag_trained |
=0. Set to 1 by train() if training is successful; set back to 0 after booting. More... | |
Property | flag_booted |
=0. Set to 1 by boot() after booting the block More... | |
Property | time_train |
Trainings time. More... | |
Property | time_use |
Use time. More... | |
Property | classtitle |
Class Title. Should have a descriptive name, as short as possible. More... | |
Property | short |
Short for the method name. More... | |
Property | flag_params |
Property | flag_ui |
(GUI setting) Whether to "publish" in blockmenu and datatool. Note that a class can be "published" without a GUI (set flag_params=0 in this case, at the class constructor). More... | |
Property | moreactions |
(GUI setting) String cell containing names of methods that may be called from the GUIs More... | |
function aggr_obsidxs::aggr_obsidxs | ( | ) |
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inherited |
Resets classlabels and calls clssr::boot()
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protected |
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protectedinherited |
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protectedinherited |
Abstract. HTML inner body.
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protectedinherited |
Default report.
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protected |
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protectedinherited |
Uses blocks and aggregates est
's using o.esag
[o,est] |
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o |
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o | |
flag_title=1 |
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Returns description string
Precedence according with flag_short:
flag_short=0 | I am sealing this to make sure that no class will try to improvise on this function. |
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Abstract. Method to get the per-feature grades. BMTool stuff.
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inherited |
Abstract. Method to get block title based on passed parameters. BMTool stuff.
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inherited |
flag_stylesheet=1 | Whether to include the stylesheet in the HTML |
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inherited |
This is used only to compose sequence string e.g. xxx->yyy->zzz
flag_short=0 |
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protectedinherited |
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Calls Parameters GUI.
If flag_params
, tries uip_<class>.m. If fails, tries uip_<ancestor>.m and so on
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Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication.
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inherited |
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Sets several properties of an object at once.
o | |
params | Cell followint the pattern{'property1', value1, 'property2', value2, ...} |
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Trains block.
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Applies block to data.
Property aggr_obsidxs::block_mold |
must contain a block object that will be replicated as needed
Definition at line 14 of file aggr_obsidxs.m.
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=esag_linear1. Estimation Aggregator object
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=0. (internal function). Whether or not the block accepts incremental training. The meaning is:
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=1. (GUI setting) Whether to call a GUI when the block is selected in blockmenu.m . If true, a routine called "uip_"<class name> will be called.
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If true, train() will pass on to do_train() a dataset with inliers only. If this flag is true, flag_train_require_inliers will be ignored, because flag_train_inliers_only being true is one way to solve the "inliers requirement".
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Property aggr_obsidxs::obsidxs |
Cell of vectors containing row indexes to a dataset. This is generated by some sgs::get_obsidxs(). Such sgs needs have one bite only. It will probably be a [no_reps]x[1] cell
Definition at line 18 of file aggr_obsidxs.m.
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