IRootLab
An Open-Source MATLAB toolbox for vibrational biospectroscopy
dataio_txt_pir Class Reference

Detailed Description

"Pirouette" TXT loader/saver

This is how a dataset will look like by selecting the whole spreadsheet in Pirouette (Informetrix Inc.) and pasting it into Excel. See Figure 1 for specification.

dataformat_pir.png
Figure 1 - "Pirouette" TXT file type

Definition at line 8 of file dataio_txt_pir.m.

+ Inheritance diagram for dataio_txt_pir:
+ Collaboration diagram for dataio_txt_pir:

Public Member Functions

function load (in o)
 Loader. More...
 
function save (in o, in data)
 Saver. More...
 
function load (in filename, in range)
 
function get_description (in o, in flag_short)
 
function setbatch (in o, in params)
 Sets several properties of an object at once. More...
 
function get_methodname (in o, in flag_short)
 
function get_report (in o)
 Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication. More...
 
function get_html (in o, in flag_stylesheet)
 
function get_params (in o, in data)
 Calls Parameters GUI. More...
 
function extract_log (in o)
 
function get_ancestry (in o, in flag_title)
 

Public Attributes

Property height
 (optional) Image height. If specified, will assign it the loaded dataset More...
 
Property direction
 
Constant Property defaultrange = [1801.47, 898.81]
 
Property filename
 
Property title
 
Property color
 

Protected Member Functions

function do_get_report (in o)
 Default report. More...
 
function do_get_html (in o)
 Abstract. HTML inner body. More...
 

Protected Attributes

Property flag_xaxis
 
Property classtitle
 Class Title. Should have a descriptive name, as short as possible. More...
 
Property short
 Short for the method name. More...
 
Property flag_params
 
Property flag_ui
 (GUI setting) Whether to "publish" in blockmenu and datatool. Note that a class can be "published" without a GUI (set flag_params=0 in this case, at the class constructor). More...
 
Property moreactions
 (GUI setting) String cell containing names of methods that may be called from the GUIs More...
 

Member Function Documentation

function irobj::do_get_html ( in  o)
protectedinherited

Abstract. HTML inner body.

function irobj::do_get_report ( in  o)
protectedinherited

Default report.

function irobj::extract_log ( in  o)
inherited
Parameters
o
Returns
[o, log]
function irobj::get_ancestry ( in  o,
in  flag_title 
)
inherited
Parameters
o
flag_title=1
function irobj::get_description ( in  o,
in  flag_short 
)
inherited

Returns description string

Precedence according with flag_short:

  • 0: title > short > classtitle
  • 1: short > title > classtitle
Parameters
flag_short=0I am sealing this to make sure that no class will try to improvise on this function.
function irobj::get_html ( in  o,
in  flag_stylesheet 
)
inherited
Parameters
flag_stylesheet=1Whether to include the stylesheet in the HTML
function irobj::get_methodname ( in  o,
in  flag_short 
)
inherited

This is used only to compose sequence string e.g. xxx->yyy->zzz

Parameters
flag_short=0
function irobj::get_params ( in  o,
in  data 
)
inherited

Calls Parameters GUI.

If flag_params, tries uip_<class>.m. If fails, tries uip_<ancestor>.m and so on

function irobj::get_report ( in  o)
inherited

Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication.

function dataio_txt_pir::load ( in  o)

Loader.

function dataio::load ( in  filename,
in  range 
)
inherited
function dataio_txt_pir::save ( in  o,
in  data 
)

Saver.

function irobj::setbatch ( in  o,
in  params 
)
inherited

Sets several properties of an object at once.

Parameters
o
paramsCell followint the pattern
{'property1', value1, 'property2', value2, ...} 

Member Data Documentation

Property irobj::classtitle
protectedinherited

Class Title. Should have a descriptive name, as short as possible.

Definition at line 50 of file irobj.m.

Property irobj::color
inherited

=[0, .8, 0]. multipurpose feature, routines may use it for different things. Major use is to change the background of objtool and blockmenu. See also classes_html.m

Definition at line 42 of file irobj.m.

Constant Property dataio::defaultrange = [1801.47, 898.81]
inherited

Definition at line 7 of file dataio.m.

Property dataio_txt_pir::direction

='hor'. Whether the pixels are taken horizontally ('hor') or vertically ('ver') to form the image. It was found that OPUS numbers the point in the image map left-right, bottom-up, hence 'hor'. Same as irdata.direction (although irdata.direction has a different default).

Definition at line 19 of file dataio_txt_pir.m.

Property dataio::filename
inherited

Definition at line 12 of file dataio.m.

Property irobj::flag_params
protectedinherited

=1. (GUI setting) Whether to call a GUI when the block is selected in blockmenu.m . If true, a routine called "uip_"<class name> will be called.

Definition at line 57 of file irobj.m.

Property irobj::flag_ui
protectedinherited

(GUI setting) Whether to "publish" in blockmenu and datatool. Note that a class can be "published" without a GUI (set flag_params=0 in this case, at the class constructor).

Definition at line 60 of file irobj.m.

Property dataio::flag_xaxis
protectedinherited

Definition at line 17 of file dataio.m.

Property dataio_txt_pir::height

(optional) Image height. If specified, will assign it the loaded dataset

Definition at line 14 of file dataio_txt_pir.m.

Property irobj::moreactions
protectedinherited

(GUI setting) String cell containing names of methods that may be called from the GUIs

Definition at line 63 of file irobj.m.

Property irobj::short
protectedinherited

Short for the method name.

Definition at line 53 of file irobj.m.

Property irobj::title
inherited

Definition at line 38 of file irobj.m.


The documentation for this class was generated from the following file: