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IRootLab
An Open-Source MATLAB toolbox for vibrational biospectroscopy
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Lasso Classifier.
This is a 2-class classifier, won't work if dataset has more than two classes.
This classifier cannot correct for weights either, so if the dataset is unbalanced, it is better to undersample the dataset to balance the classes
This classifier uses a LASSO function that has no "intercept" in it, it assumes that the variables have been mean-centered, so the variables need to be mean-centered. Standardization is actually recommended!
In order to use with more than two classes, please encapsulate inside an aggr_pairs
Definition at line 11 of file clssr_lasso.m.
Public Member Functions | |
function | clssr_lasso () |
function get | no_outputs (in o) |
function | boot (in o) |
Resets classlabels and calls clssr::boot() More... | |
function | get_classes (in o, in data) |
function | draw_domain (in o, in parameters) |
function | get_grades (in o, in params) |
Abstract. Method to get the per-feature grades. BMTool stuff. More... | |
function | get_gradeslegend (in o, in params) |
Abstract. Method to get block title based on passed parameters. BMTool stuff. More... | |
function | use (in o, in data) |
Applies block to data. More... | |
function | train (in o, in data, in varargin) |
Trains block. More... | |
function | get_description (in o, in flag_short) |
function | setbatch (in o, in params) |
Sets several properties of an object at once. More... | |
function | get_methodname (in o, in flag_short) |
function | get_report (in o) |
Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication. More... | |
function | get_html (in o, in flag_stylesheet) |
function | get_params (in o, in data) |
Calls Parameters GUI. More... | |
function | extract_log (in o) |
function | get_ancestry (in o, in flag_title) |
Public Attributes | |
Property | nf_select |
Number of features to have non-zero coefficient. More... | |
Property | flag_precond |
Property | precond_threshold |
Property | precond_no_factors |
Property | flag_datay |
Property | title |
Property | color |
Protected Member Functions | |
function | do_boot (in o) |
function | do_train (in o, in data) |
function | do_use (in o, in data) |
function | get_no_outputs (in o) |
function | do_draw_domain (in o, in params) |
function | do_get_report (in o) |
Default report. More... | |
function | do_get_html (in o) |
Abstract. HTML inner body. More... | |
Protected Attributes | |
Property | L |
Regression coefficients. More... | |
Property | classlabels |
Property | no_outputs |
Property | inputclass |
Property | flag_bootable |
=0. (High-Level setting and internal function) Whether or not the block is bootable. More... | |
Property | flag_trainable |
=0. (High-Level + internal function). Whether or not the block can be trained, or completely non-data-based. More... | |
Property | flag_incrtrain |
Property | flag_fixednf |
=1. (internal function) If true, dataset number of features will be checked upon training and using. Ignored if o.flag_trainable is 0. More... | |
Property | flag_fixedno |
=0. (internal function) If true, dataset number of observations will be checked upon training and using. Ignored if o.flag_trainable is 0. More... | |
Property | flag_multiin |
=0. (High-Level setting (gencode)) Whether block allows/expects multiple objects as input. More... | |
Property | flag_out |
=1. (High-Level setting (gencode)) Whether the block generates any output at all (counterexample: vis blocks) More... | |
Property | flag_train_inliers_only |
Property | flag_train_require_inliers |
Property | nf |
=-1. Number of features. Cleared at boot(), assigned or reinforced at train(). More... | |
Property | no |
=-1. Number of observations. More... | |
Property | flag_trained |
=0. Set to 1 by train() if training is successful; set back to 0 after booting. More... | |
Property | flag_booted |
=0. Set to 1 by boot() after booting the block More... | |
Property | time_train |
Trainings time. More... | |
Property | time_use |
Use time. More... | |
Property | classtitle |
Class Title. Should have a descriptive name, as short as possible. More... | |
Property | short |
Short for the method name. More... | |
Property | flag_params |
Property | flag_ui |
(GUI setting) Whether to "publish" in blockmenu and datatool. Note that a class can be "published" without a GUI (set flag_params=0 in this case, at the class constructor). More... | |
Property | moreactions |
(GUI setting) String cell containing names of methods that may be called from the GUIs More... | |
function clssr_lasso::clssr_lasso | ( | ) |
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inherited |
Resets classlabels and calls clssr::boot()
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protected |
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protectedinherited |
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protectedinherited |
Abstract. HTML inner body.
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protectedinherited |
Default report.
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protected |
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protected |
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inherited |
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inherited |
o |
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inherited |
o | |
flag_title=1 |
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inherited |
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inherited |
Returns description string
Precedence according with flag_short:
flag_short=0 | I am sealing this to make sure that no class will try to improvise on this function. |
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inherited |
Abstract. Method to get the per-feature grades. BMTool stuff.
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inherited |
Abstract. Method to get block title based on passed parameters. BMTool stuff.
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inherited |
flag_stylesheet=1 | Whether to include the stylesheet in the HTML |
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inherited |
This is used only to compose sequence string e.g. xxx->yyy->zzz
flag_short=0 |
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protectedinherited |
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inherited |
Calls Parameters GUI.
If flag_params
, tries uip_<class>.m. If fails, tries uip_<ancestor>.m and so on
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inherited |
Object reports are plain text. HTML would be cool but c'mon, we don't need that sophistication.
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inherited |
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inherited |
Sets several properties of an object at once.
o | |
params | Cell followint the pattern{'property1', value1, 'property2', value2, ...} |
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inherited |
Trains block.
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inherited |
Applies block to data.
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protectedinherited |
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inherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
=0. (internal function). Whether or not the block accepts incremental training. The meaning is:
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protectedinherited |
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protectedinherited |
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protectedinherited |
=1. (GUI setting) Whether to call a GUI when the block is selected in blockmenu.m . If true, a routine called "uip_"<class name> will be called.
Property clssr_lasso::flag_precond |
Definition at line 20 of file clssr_lasso.m.
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protectedinherited |
If true, train() will pass on to do_train() a dataset with inliers only. If this flag is true, flag_train_require_inliers will be ignored, because flag_train_inliers_only being true is one way to solve the "inliers requirement".
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protectedinherited |
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protected |
Regression coefficients.
Definition at line 30 of file clssr_lasso.m.
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protectedinherited |
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protectedinherited |
Property clssr_lasso::nf_select |
Number of features to have non-zero coefficient.
Definition at line 17 of file clssr_lasso.m.
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protectedinherited |
Property clssr_lasso::precond_no_factors |
Definition at line 24 of file clssr_lasso.m.
Property clssr_lasso::precond_threshold |
Definition at line 22 of file clssr_lasso.m.
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protectedinherited |
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protectedinherited |